Skip to main content

Table 3 Comparison between PlasmoDB and Plasmobase domain predictions

From: Plasmobase: a comparative database of predicted domain architectures for Plasmodium genomes

Species PlasmoDB Plasmobase
#Pred domains #Prots with no domaina #Pred domains %Improvb #Prots with no domaina
P. falciparum 3D7 6037 2068 (37.31%) 7842 30 1526 (27.54%)
P. falciparum IT 5783 2085 (37.97%) 7035 22 1718 (31.29%)
P. vivax 5177 2132 (38.16%) 6431 24 1830 (32.76%)
P. knowlesi H 5469 1929 (36.89%) 6430 18 1627 (31.11%)
P. cynomolgi 4731 2449 (42.84%) 5660 20 2242 (39.22%)
P. reichenowi CDC 6110 2090 (35.75%) 7355 20 1734 (29.66%)
P. chabaudi 4834 2017 (38.66%) 6128 27 1572 (30.13%)
P. berghei 4715 1951 (38,43%) 5924 26 1566 (30.85%)
P. yoelii 17X 5564 2038 (34.09%) 6844 23 1872 (31.31%)
P. yoelii yoelii 17XNL 5134 4078 (52.79%) 6265 22 3311 (42.87%)
P. yoelii YM 5355 1981 (34.69%) 6592 23 1557 (27.27%)
  1. aIn parenthesis, the percentage of proteins with no domain is computed as #Prots with no domain/#Proteins, where #Proteins is reported in TableĀ 1
  2. bThe improvement is computed as (#Predicted domains in Plasmobaseā€”#Predicted domains in PlasmoDB)/#Predicted domains in Plasmobase