Comparative physical genome mapping of malaria vectors Anopheles sinensis and Anopheles gambiae

Malaria Journal

Table 3 Assembly and mapping metrics for anopheline genomes

Species	Genome assembly	Total scaffolds	Mapped scaffolds	Scaffold N50, bp	Total length, Mb	Mapped length, Mb	Mapped, %
An. albimanus	AalbS1	204	40	18,068,499	170.5	167.4	98.2
An. gambiae	AgamP4	8	5	49,364,325	264	273.1	84.3
An. stephensi	AsteI2	23,371	86	1,591,355	221.3	137.14	62
An. stephensi	AsteS1	1100	101	837,295	225	92.83	41
An. atroparvus	AatrE1	1371	7	9,206,694	224.3	88.8	39.6
An. sinensis	AsinC2	9592	52	814,231	220.8	79.3	35.9
An. funestus	AfunF1	1392	103	671,960	225.2	79.0	35.1

Data for An. sinensis are from this study. Data for An. albimanus and An. stephensi AsteI2 are from Ref. [26] and Ref. [23], respectively. Data for An. gambiae are from Ref. [25] and https://www.vectorbase.org/organisms/anopheles-gambiae/pest/agamp4. Data for other species are from Ref. [12]

ISSN: 1475-2875