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Table 1 Estimates of nucleotide diversity, natural selection, haplotype diversity and neutrality indices of pkmsp1

From: Within-population genetic diversity and population structure of Plasmodium knowlesi merozoite surface protein 1 gene from geographically distinct regions of Malaysia and Thailand

Domain

No. samples

SNPs

No. haplotype

Diversity ± SD

dN–dS

Codon based z test

Taj D

Fu and Li’s D*

Fu and Li’s F*

Haplotype

Nucleotide

Full-length

11

384

10

1.0 ± 0.04

0.039 ± 0.003

0.38

P > 0.1

0.161

0.54

0.50

I

32

9

0.978 ± 0.05

0.019 ± 0.002

− 1.14

P > 0.1

0.50

0.70

0.74

III

53

10

1.0 ± 0.04

0.0151 ± 0.001

− 3.88

P < 0.000

0.21

0.27

0.29

V

12

7

0.911 ± 0.07

0.010 ± 0.001

− 2.44

P < 0.01

− 0.68

− 0.72

− 0.80

VII

53

9

0.978 ± 0.05

0.019 ± 0.002

− 3.55

P < 0.000

− 0.23

− 0.36

− 0.37

IX (42 kDa)

27

10

1.0 ± 0.04

0.007 ± 0.0007

− 4.34

P < 0.000

− 0.01

− 0.05

− 0.04

  1. SNPs single nucleotide polymorphisms, SD standard deviation