Table 1 Concordance of SNP and microsatelitte-based COI estimates in 21 clinical Plasmodium vivax samples

L066

CGTCGTACAGACCCATCCATCCGCTGCACCACGTAA

0

1 [1,1]

1

1

0

Yes

L099

CGCTNCACNAACCTATCCAGNCANTGNNNCNAGTAC

8

2 [2,2]

0.9994

2

2

Yes

N121

CGTCGCGCGGACCTGTCCGTCCGCTACGCTGAACGC

0

1 [1,1]

1

1

0

Yes

N188

CGCCGTACGGACTTGTCCGTTCGTTGCGCTGAATAC

0

1 [1,1]

1

1

0

Yes

N257

NGNNNNANNNNCTCANNNNGNNNCNNNGCCAAGNNC

21

3 [3,5]

0.5813

3

7

Yes

N315

CGNNNNGTAAACNCATCCNGNCGCTACGCNNAGNAN

11

2 [2,2]

0.9881

2

2

Yes

N426

CGNTNNATNNNCNCATNNNNCTNNNNCGNNNAGCAN

19

3 [2,4]

0.6174

3

6

Yes

N464

CGTCGCACGGACTCACCTGTTCGCTGCGCCGAGCAC

0

1 [1,1]

1

1

0

Yes

N471

CTCCGTACGGACTTGTCCGTCCGCTGCGCCAAGTAC

0

1 [1,1]

1

1

0

Yes

M396

CNCCGTNCGGACCCANNCANCCNCTNCGCCNNGNNN

12

2 [2,2]

0.972

2

1

Yes

J073

CGCTGCATNNACCTGNCNNGTCNCNNCGCCAAGTAC

8

2 [2,2]

0.9989

2

3

Yes

J116

CGTCATGTAGGCCTACCTGGCCGCTGCGTCACGTAC

0

1 [1,1]

1

1

0

Yes

J244

CGTTATATGGACCTACCCAGCTGCCGCGCCAAATAC

0

1 [1,1]

1

1

0

Yes

J255

CGCCGTGCGGACTTGCCCGTTCATTGCGCCAAGTAC

0

1 [1,1]

1

1

0

Yes

J268

CGCTATACAAACCCATCCGTTCACTGTGCCACGCAC

0

1 [1,1]

1

1

0

Yes

L285

CGCCGTGCNGACTNGTCCGTCCGCTGCNCCAAGCNC

4

1 [1,2]

0.7197

2

3

Partial

J096

NGCNGNACGGACTTGCCCGTCCGTTGCGCTGAATAC

3

1 [1,1]

0.9988

2

2

No

L110

CNCCGTACNNANTTNNCCGTCNGTTGNGCTGAATAC

8

2 [2,2]

0.999

1

0

No

N427

CGCTATACGAACTTACCTATCTGCTGCGCCAAGCGC

0

1 [1,1]

1

2

1

No

N492

CGTCGCACAAGCTCGTCCGGTCGTTGCGCTGAGTAC

0

1 [1,1]

1

2

1

No

N524

CGNCGTNTNAACCCNCCNGGCTNCCANNCTAAGNNC

10

2 [2,2]

0.9989

3

5

No

M496

CGCTGCATAAACCCATCTAGTTACTGCGCCACGTAC

0

1 [1,1]

1

2

1

No

J249

CTCCGCACAAACTCGTCCGTCTACTACGCCGAGCAC

0

1 [1,1]

1

2

2

No